About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10418486_10419270_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10418486 - 10419270
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCAAG
5'SS Class:
major
3'SS Sequence:
TAACTTACACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTCTCCTTAACT
Flanking Amino Acid:
FVRSLKQGEKDTLERHLDPT
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.7
41.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
60.4
0.24
1
53.5
40.9
Minor 5ss
38.8
-1.3
2.8
48.4
47.4
Minor BPS
86.2
1.22
1.1
91.7
38.1

Associated Gene:

Gene:
GPATCH1
Ensembl Gene ID:
ENSAPLG00000007584
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007906
10408603 - 10425467
16865