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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10419450_10419753_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10419450 - 10419753
Intron Length:
304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATGCT
5'SS Class:
major
3'SS Sequence:
TTGACTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
AATGTTTTGACT
Flanking Amino Acid:
DKVEVPRDQENDTDDKETAV
Intron Amino Acid Position:
588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
73.9
34.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
83.3
0.75
0.9
80.9
36.6
Minor 5ss
40.8
-1
3.2
59
45.7
Minor BPS
61.2
0.43
1.3
73.12
38.1

Associated Gene:

Gene:
GPATCH1
Ensembl Gene ID:
ENSAPLG00000007584
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007906
10408603 - 10425467
16865