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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10421700_10422716_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
10421700 - 10422716
Intron Length:
1017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTTTA
5'SS Class:
weak_major
3'SS Sequence:
TTTATTTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
LPDSSSSNAQDNVSAKAEPG
Intron Amino Acid Position:
818

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
76.7
34.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
83.8
0.76
0.7
80.2
31.8
Minor 5ss
68.9
0.64
1.8
75.8
40.1
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
GPATCH1
Ensembl Gene ID:
ENSAPLG00000007584
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007906
10408603 - 10425467
16865