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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10428727_10430527_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10428727 - 10430527
Intron Length:
1801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GCTGTTTTCATT
Flanking Amino Acid:
SECNLSPDDRRVVTSSYDNT
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1.1
86.9
30.1
Major BPS
100
1.24
0.5
100
0
Major PPT
80
0.67
0.8
78.2
35.2
Minor 5ss
41.8
-0.9
2.9
59.7
44.8
Minor BPS
47.8
-0
1.8
62.87
42.6

Associated Gene:

Gene:
WDR88
Ensembl Gene ID:
ENSAPLG00000007912
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008202
10426577 - 10439493
12917