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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10431711_10433904_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10431711 - 10433904
Intron Length:
2194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGAAAC
5'SS Class:
major
3'SS Sequence:
ATCTGTATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATATTTTTATCT
Flanking Amino Acid:
RTRSTSVTINEGHSNAISDC
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
68.8
36.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.8
0.63
0.9
74.2
39.7
Minor 5ss
35
-1.7
3
40.5
39.4
Minor BPS
64.2
0.53
1.5
78.56
37.8

Associated Gene:

Gene:
WDR88
Ensembl Gene ID:
ENSAPLG00000007912
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008202
10426577 - 10439493
12917