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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10434090_10435270_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10434090 - 10435270
Intron Length:
1181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTATTCTGATTT
Flanking Amino Acid:
SVSSCVFSQDASLVVSGGYD
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.1
0.86
0.8
86
32.8
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
52.3
0.15
1.7
70.22
40.7

Associated Gene:

Gene:
WDR88
Ensembl Gene ID:
ENSAPLG00000007912
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008202
10426577 - 10439493
12917