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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10435354_10437630_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10435354 - 10437630
Intron Length:
2277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGAGG
5'SS Class:
major
3'SS Sequence:
TGCTCTACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGTCTTAAAGT
Flanking Amino Acid:
DAGYKKLSLKGHCDWVTDVA
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
57.3
47
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
72.3
0.5
0.8
66.9
34.1
Minor 5ss
30.7
-2.2
3.3
40.3
45.4
Minor BPS
59.3
0.37
2
79.01
43.8

Associated Gene:

Gene:
WDR88
Ensembl Gene ID:
ENSAPLG00000007912
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008202
10426577 - 10439493
12917