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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10438202_10439355_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10438202 - 10439355
Intron Length:
1154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCTATCA
5'SS Class:
weak_major
3'SS Sequence:
ATATTTATACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTACTAAAAT
Flanking Amino Acid:
RKEKGSKIAQCEECEKPFLS
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.1
0.21
1.2
56.5
37.1
Major BPS
100
1.24
0.5
100
0
Major PPT
71.5
0.48
1
64.5
45
Minor 5ss
33.6
-1.9
3
41.4
44.5
Minor BPS
58.9
0.36
1.9
81
40.1

Associated Gene:

Gene:
WDR88
Ensembl Gene ID:
ENSAPLG00000007912
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008202
10426577 - 10439493
12917
Gene:
LRP3
Ensembl Gene ID:
ENSAPLG00000007963
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041165
10437631 - 10486371
48741