About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10439576_10468386_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10439576 - 10468386
Intron Length:
28811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
ACCTTTATAACA
Flanking Amino Acid:
LYIFMYCTYKVNLFLTGKIE
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
77
0.61
0.9
72.5
36.8
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
53.9
0.12
1.6
61.52
39.1

Associated Gene:

Gene:
LRP3
Ensembl Gene ID:
ENSAPLG00000007963
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041165
10437631 - 10486371
48741