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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10464930_10468386_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10464930 - 10468386
Intron Length:
3457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGAAGC
5'SS Class:
major
3'SS Sequence:
TGTCTTTACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
ACCTTTATAACA
Flanking Amino Acid:
MRVNLFLTGKIE
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
65.9
40.1
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
77
0.61
0.9
72.5
36.8
Minor 5ss
27
-2.6
3
34.1
41.6
Minor BPS
53.9
0.12
1.6
61.52
39.1

Associated Gene:

Gene:
LRP3
Ensembl Gene ID:
ENSAPLG00000007963
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008265
10464923 - 10486371
21449