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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10468435_10474255_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10468435 - 10474255
Intron Length:
5821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTATTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TCCTTATTAACA
Flanking Amino Acid:
GKIESAVTSLAACSGELEQH
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
80
0.75
1
78.6
31
Major PPT
77.2
0.61
0.9
73.2
35
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
65.2
0.47
1.6
71.68
40.7

Associated Gene:

Gene:
LRP3
Ensembl Gene ID:
ENSAPLG00000007963
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041165
10437631 - 10486371
48741
ENSAPLT00000020613
10465191 - 10486371
21181
ENSAPLT00000008265
10464923 - 10486371
21449