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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1047035_1049038_R

Intron Information:

Intron Rank:
129788
Intron Class:
major
Intron Phase:
Intron Coordinates:
1047035 - 1049038
Intron Length:
2004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGACT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
GCTGCTATAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
35.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
66.6
0.37
1
67
26.8
Minor 5ss
34.3
-1.8
3.3
49.5
46.5
Minor BPS
50.5
0.01
1.7
60.35
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017020
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017687
1046035 - 1070525
24491