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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10483591_10484524_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10483591 - 10484524
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTGTTTTCATT
Flanking Amino Acid:
KLYSLRTREYRAFETQMTRL
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
100
1.24
0.5
100
0
Major PPT
89.4
0.89
0.7
81.6
35
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
50.7
0.1
1.8
71.21
40.9

Associated Gene:

Gene:
LRP3
Ensembl Gene ID:
ENSAPLG00000007963
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020613
10465191 - 10486371
21181
ENSAPLT00000008265
10464923 - 10486371
21449
ENSAPLT00000041165
10437631 - 10486371
48741