Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10484658_10485558_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10484658 - 10485558

Intron Length:

901

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTATGGAGA

5'SS Class:

major

3'SS Sequence:

CTGTTTGTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAG

U12 Branch Point Sequence:

TATGTGTGAAAT

Flanking Amino Acid:

EDFPVYNASQASVLQNIRTA

Intron Amino Acid Position:

542

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.7

0.51

65.1

40.6

Major BPS

67.4

0.43

1.5

65.3

43.7

Major PPT

81.3

0.7

0.9

75.6

38.3

Minor 5ss

39.4

-1.2

3.1

47.9

42.5

Minor BPS

45.1

-0.2

2.2

66.83

43.6

Associated Gene:

Gene:

LRP3

Ensembl Gene ID:

ENSAPLG00000007963

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008265

10464923 - 10486371

21449

ENSAPLT00000041165

10437631 - 10486371

48741

ENSAPLT00000020613

10465191 - 10486371

21181