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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1049202_1060758_R

Intron Information:

Intron Rank:
129794
Intron Class:
major
Intron Phase:
Intron Coordinates:
1049202 - 1060758
Intron Length:
11557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGGTGCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
AAACAAACAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
1
81.7
30
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
75.6
0.58
1
65.9
45.3
Minor 5ss
39.7
-1.2
3.4
57.1
40.8
Minor BPS
35.2
-1
1.9
48.21
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017020
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047274
1048967 - 1061007
12041