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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10495389_10496444_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10495389 - 10496444
Intron Length:
1056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTAAC
U12 Branch Point Sequence:
GCCGCGCTAACC
Flanking Amino Acid:
NKPKCVNRLTESVTCWGQKL
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
81.4
32.7
Major BPS
57.1
0.18
1.1
59
36
Major PPT
82.6
0.73
0.8
77.4
31.3
Minor 5ss
39.7
-1.2
2.9
51.2
45.7
Minor BPS
42.7
-0.5
2.3
51.32
45.7

Associated Gene:

Gene:
SLC7A10
Ensembl Gene ID:
ENSAPLG00000008042
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008376
10495261 - 10535473
40213