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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10496623_10496959_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10496623 - 10496959
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTCAT
U12 Branch Point Sequence:
TCTCTCCCCACA
Flanking Amino Acid:
KKPKIFRPIKVNLLIPVTYL
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.9
36.7
Major BPS
64.7
0.37
1.2
67
39.8
Major PPT
78.6
0.64
0.7
72.6
25.7
Minor 5ss
36.4
-1.5
3.1
48.5
47.2
Minor BPS
42.6
-0.5
2.1
57.29
42

Associated Gene:

Gene:
SLC7A10
Ensembl Gene ID:
ENSAPLG00000008042
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008376
10495261 - 10535473
40213