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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10497110_10500231_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10497110 - 10500231
Intron Length:
3122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTCTCTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
TTTCTCTCTACA
Flanking Amino Acid:
CTPIPALLVCCLATLIIMLV
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.8
34.4
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
89.5
0.89
0.6
84.3
23.7
Minor 5ss
48.1
-0.2
2.8
68.1
42.7
Minor BPS
55.3
0.16
1.9
73.04
38.2

Associated Gene:

Gene:
SLC7A10
Ensembl Gene ID:
ENSAPLG00000008042
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008376
10495261 - 10535473
40213