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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10500329_10501443_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10500329 - 10501443
Intron Length:
1115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGATGG
5'SS Class:
major
3'SS Sequence:
TTCTCATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTATTCTCATTT
Flanking Amino Acid:
GINGYLFTSSRLCFSGAREG
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.2
64.6
42.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87.1
0.83
0.7
84.9
28.6
Minor 5ss
33.7
-1.9
2.9
39.7
45.7
Minor BPS
49.8
0.06
1.8
68.32
43.1

Associated Gene:

Gene:
SLC7A10
Ensembl Gene ID:
ENSAPLG00000008042
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008376
10495261 - 10535473
40213