About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10501548_10501642_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10501548 - 10501642
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TCTGTTGCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAG
U12 Branch Point Sequence:
TGTATTTCAGTT
Flanking Amino Acid:
ELLSSNAVAVTFGEKLLGYF
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.7
29.8
Major BPS
67.2
0.43
1.5
77.4
37.3
Major PPT
75.6
0.58
0.9
73.6
37
Minor 5ss
36.9
-1.5
2.7
44
38.6
Minor BPS
47
-0.1
1.7
65.18
39.8

Associated Gene:

Gene:
SLC7A10
Ensembl Gene ID:
ENSAPLG00000008042
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008376
10495261 - 10535473
40213