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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10501767_10503428_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10501767 - 10503428
Intron Length:
1662

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
AATTCTTTTATT
Flanking Amino Acid:
YVTEELVDPRRNLPRAIFIS
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.8
1.18
0.7
98.3
5.31
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.1
0.63
0.9
78.8
33.8
Minor 5ss
30
-2.3
3.8
44.9
43.2
Minor BPS
65.7
0.57
1.5
79.18
37.3

Associated Gene:

Gene:
SLC7A10
Ensembl Gene ID:
ENSAPLG00000008042
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008376
10495261 - 10535473
40213