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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10503583_10504893_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10503583 - 10504893
Intron Length:
1311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCTGT
5'SS Class:
major
3'SS Sequence:
GCTTCCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTAAC
U12 Branch Point Sequence:
GAAGGCTTAACC
Flanking Amino Acid:
ITVGFIQIFKGNYEELTPSK
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.1
62.7
44.3
Major BPS
59.3
0.23
1.3
63.6
40.3
Major PPT
74.6
0.55
1
68.9
37
Minor 5ss
44.6
-0.6
3.1
65.7
45.4
Minor BPS
53.7
0.09
1.9
61.3
43.5

Associated Gene:

Gene:
SLC7A10
Ensembl Gene ID:
ENSAPLG00000008042
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008376
10495261 - 10535473
40213