About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10505020_10505680_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10505020 - 10505680
Intron Length:
661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTGCTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAC
U12 Branch Point Sequence:
TTTCACTGAATT
Flanking Amino Acid:
ASRILSMVCLLLLTWVNSSS
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.2
86.9
30.1
Major BPS
72.3
0.55
1.2
77.4
37.4
Major PPT
86
0.81
0.8
77.8
36.7
Minor 5ss
37.6
-1.4
3
50.6
39.2
Minor BPS
64.7
0.54
1.6
83.92
36.3

Associated Gene:

Gene:
SLC7A10
Ensembl Gene ID:
ENSAPLG00000008042
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008376
10495261 - 10535473
40213