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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10505833_10511780_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10505833 - 10511780
Intron Length:
5948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGTAC
U12 Branch Point Sequence:
TTTTCTTGTACT
Flanking Amino Acid:
YVTEIFGGLAGFLLLWSAVL
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
78.8
35.5
Major BPS
49.7
-0
1.4
52.7
42.9
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
36.6
-1.5
2.6
39.1
38.9
Minor BPS
67.5
0.63
1.8
88.92
35.6

Associated Gene:

Gene:
SLC7A10
Ensembl Gene ID:
ENSAPLG00000008042
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008376
10495261 - 10535473
40213