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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10511986_10535373_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10511986 - 10535373
Intron Length:
23388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGGCG
5'SS Class:
major
3'SS Sequence:
TTGTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ACTCACTTATCT
Flanking Amino Acid:
GLGSACAIIIGNIIGSGIFI
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
61.7
43
Major BPS
85
0.87
0.8
85.6
23
Major PPT
85.7
0.8
0.8
77.7
36.7
Minor 5ss
30
-2.3
3.5
39.7
45.8
Minor BPS
55.4
0.25
1.8
73.09
43.3

Associated Gene:

Gene:
SLC7A10
Ensembl Gene ID:
ENSAPLG00000008042
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008376
10495261 - 10535473
40213