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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10535799_10536472_F

Intron Information:

Intron Rank:
127078
Intron Class:
major
Intron Phase:
Intron Coordinates:
10535799 - 10536472
Intron Length:
674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGAAGT
5'SS Class:
major
3'SS Sequence:
TGTTTGACTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TTTTGTTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
0.9
73.3
37.4
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
74.2
0.54
0.9
71.4
39.5
Minor 5ss
35.8
-1.6
3
49
46.8
Minor BPS
72
0.77
1.7
90.81
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018506
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039569
10535494 - 10571949
36456