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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10536547_10571646_F

Intron Information:

Intron Rank:
127079
Intron Class:
major
Intron Phase:
Intron Coordinates:
10536547 - 10571646
Intron Length:
35100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
TCTGTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAACAT
U12 Branch Point Sequence:
TCTGTCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.3
74.1
36.5
Major BPS
58.7
0.22
1.2
67
38
Major PPT
85.7
0.8
0.8
79.7
32.4
Minor 5ss
35.9
-1.6
3.3
49.7
41.3
Minor BPS
60.1
0.31
1.8
70.34
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018506
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039569
10535494 - 10571949
36456