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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10560994_10571646_F

Intron Information:

Intron Rank:
127080
Intron Class:
major
Intron Phase:
Intron Coordinates:
10560994 - 10571646
Intron Length:
10653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACCTA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAACAT
U12 Branch Point Sequence:
TCTGTCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71.3
40.5
Major BPS
58.7
0.22
1.2
67
38
Major PPT
85.7
0.8
0.8
79.7
32.4
Minor 5ss
40.8
-1
3.2
56.1
48
Minor BPS
60.1
0.31
1.8
70.34
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018506
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043581
10560682 - 10571949
11268