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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1057372_1057479_R

Intron Information:

Intron Rank:
129792
Intron Class:
major
Intron Phase:
Intron Coordinates:
1057372 - 1057479
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTTTATTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
79.7
35.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
82
0.72
0.8
77.9
35.6
Minor 5ss
41.2
-1
2.9
54.5
43.9
Minor BPS
69.8
0.62
1.5
78.59
31.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017020
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043386
1057081 - 1061007
3927