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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1057597_1060758_R

Intron Information:

Intron Rank:
129791
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
1057597 - 1060758
Intron Length:
3162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TACTGGAAATTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
CTCTCTTTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
1
81.7
30
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
51.7
0.04
1.1
49.4
42.7
Minor 5ss
39.7
-1.2
3.4
57.1
40.8
Minor BPS
66.7
0.61
1.6
79.47
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017020
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043386
1057081 - 1061007
3927
ENSAPLT00000029744
1057081 - 1061007
3927