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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10754214_10762416_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10754214 - 10762416
Intron Length:
8203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTGAT
U12 Branch Point Sequence:
TTCTCTGTAACA
Flanking Amino Acid:
VLQRFRGFGGVRIEDDIAVT
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
83.1
30.9
Major BPS
71.5
0.53
1.1
63
43.2
Major PPT
76.6
0.6
0.9
72.8
36.2
Minor 5ss
31.5
-2.1
2.7
34
41.5
Minor BPS
65.4
0.48
2
78.6
38.6

Associated Gene:

Gene:
PEPD
Ensembl Gene ID:
ENSAPLG00000008402
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008841
10753894 - 10886329
132436