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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10762609_10771934_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10762609 - 10771934
Intron Length:
9326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAGAA
U12 Branch Point Sequence:
TCCATCAGAACT
Flanking Amino Acid:
DVHDVGGYPEGVDRIDLPGL
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
1
86.4
29.2
Major BPS
56.1
0.15
1
52.7
34.2
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
35
-1.7
3.3
50
46.3
Minor BPS
48.2
-0
1.8
66.07
44.3

Associated Gene:

Gene:
PEPD
Ensembl Gene ID:
ENSAPLG00000008402
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008841
10753894 - 10886329
132436