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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10788211_10804981_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10788211 - 10804981
Intron Length:
16771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TAAAATTTACAT
Flanking Amino Acid:
NDKTIEDGDLCLFDMGGEYY
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
83.4
0.75
0.7
81.5
30.4
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
45.4
-0.2
1.8
61.32
41.7

Associated Gene:

Gene:
PEPD
Ensembl Gene ID:
ENSAPLG00000008402
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008841
10753894 - 10886329
132436