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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10805060_10811574_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10805060 - 10811574
Intron Length:
6515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTACCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTACCT
Flanking Amino Acid:
RHTSYTCICGSGENSSVLHY
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.8
78
38.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
78.6
0.64
0.8
73.6
36
Minor 5ss
33.6
-1.9
2.9
41.7
44.7
Minor BPS
67.3
0.62
1.6
82.56
39.6

Associated Gene:

Gene:
PEPD
Ensembl Gene ID:
ENSAPLG00000008402
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008841
10753894 - 10886329
132436