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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10811644_10847981_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10811644 - 10847981
Intron Length:
36338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATATTGTTAATT
Flanking Amino Acid:
KAGMKEYELESLFQHYCYTR
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.9
35.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
89.6
0.89
0.7
84.7
30.1
Minor 5ss
32.2
-2
3.5
47.6
47.9
Minor BPS
60.7
0.41
2
78.58
38

Associated Gene:

Gene:
PEPD
Ensembl Gene ID:
ENSAPLG00000008402
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008841
10753894 - 10886329
132436