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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10855464_10861321_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10855464 - 10861321
Intron Length:
5858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TTCCTGTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTTTATGT
Flanking Amino Acid:
SKEASFEGISQFNVNNKILH
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
69.9
34.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80
0.68
0.8
72.7
37.5
Minor 5ss
35.2
-1.7
3.3
49.1
41.3
Minor BPS
55.3
0.25
1.9
75.62
41.6

Associated Gene:

Gene:
PEPD
Ensembl Gene ID:
ENSAPLG00000008402
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008841
10753894 - 10886329
132436