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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10863072_10864742_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10863072 - 10864742
Intron Length:
1671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
AACTTCTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATCTAAAACT
Flanking Amino Acid:
AVDEVHYVTEISNVLASKKP
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
80
0.75
1
78.6
31
Major PPT
76.6
0.6
0.8
74.1
35.7
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
53.7
0.2
1.9
75.04
41.4

Associated Gene:

Gene:
PEPD
Ensembl Gene ID:
ENSAPLG00000008402
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008841
10753894 - 10886329
132436