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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10879710_10880931_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10879710 - 10880931
Intron Length:
1222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTAACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
TTTGTCTTAACC
Flanking Amino Acid:
CTDTGIVFRQESYFHWTFGV
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.3
34.3
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
66.5
0.37
0.9
59.6
40.8
Minor 5ss
34.5
-1.8
3.9
55
49.2
Minor BPS
80.5
0.94
1.2
85.68
32.7

Associated Gene:

Gene:
PEPD
Ensembl Gene ID:
ENSAPLG00000008402
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008841
10753894 - 10886329
132436