About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10881116_10886178_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10881116 - 10886178
Intron Length:
5063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCTCC
5'SS Class:
major
3'SS Sequence:
AAATCTCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTTCCATTAACT
Flanking Amino Acid:
MAAAGPSFWLGNDT
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
40.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
68.9
0.43
0.9
59.6
41.7
Minor 5ss
44.7
-0.6
2.8
52.1
44.7
Minor BPS
72.2
0.77
1.6
86.99
38.2

Associated Gene:

Gene:
PEPD
Ensembl Gene ID:
ENSAPLG00000008402
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008841
10753894 - 10886329
132436