About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1113363_1123496_F

Intron Information:

Intron Rank:
129441
Intron Class:
major
Intron Phase:
Intron Coordinates:
1113363 - 1123496
Intron Length:
10134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTGCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTCCCTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
71.1
0.48
0.9
65.8
36
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
88.3
1.28
0.9
97.74
25.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019621
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027004
1113250 - 1125179
11930