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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11150057_11154244_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11150057 - 11154244
Intron Length:
4188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCGCC
5'SS Class:
major
3'SS Sequence:
CCTCCGTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
TTTAAGAGAAAC
Flanking Amino Acid:
METKEGRSMSRLSL
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
66
38.3
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
77.5
0.62
0.8
68
37.5
Minor 5ss
37.7
-1.4
3.3
51.4
45.3
Minor BPS
38
-0.9
2.4
55.93
41.3

Associated Gene:

Gene:
KCTD15
Ensembl Gene ID:
ENSAPLG00000009251
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009622
11149827 - 11190350
40524