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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11348289_11349147_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11348289 - 11349147
Intron Length:
859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAC
U12 Branch Point Sequence:
TGTTTCCTACTT
Flanking Amino Acid:
SLPQDPAIVQSSLGSSTTSS
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.2
30.8
Major BPS
58.9
0.22
1.3
58.4
40
Major PPT
86.4
0.82
0.7
85.6
29.2
Minor 5ss
33.5
-1.9
2.9
40.7
45.5
Minor BPS
53.9
0.2
1.9
76.83
40

Associated Gene:

Gene:
LSM14A
Ensembl Gene ID:
ENSAPLG00000009420
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009867
11340519 - 11359516
18998