About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11353055_11353361_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11353055 - 11353361
Intron Length:
307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCTTTT
5'SS Class:
major
3'SS Sequence:
TTTCCAACTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTCCAACT
Flanking Amino Acid:
KSLENQEHRRAEAHKVSRSE
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.2
78.8
38.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.8
0.56
0.8
72
32.7
Minor 5ss
51.1
0.04
2.9
75.5
40.6
Minor BPS
54
0.2
1.8
77.5
38.8

Associated Gene:

Gene:
LSM14A
Ensembl Gene ID:
ENSAPLG00000009420
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009867
11340519 - 11359516
18998