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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11357095_11358850_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11357095 - 11358850
Intron Length:
1756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAATAT
5'SS Class:
major
3'SS Sequence:
TTGTTTCCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTAATTGTAACA
Flanking Amino Acid:
GREFADFEYRKDNKVAA*
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
71
35.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81.4
0.71
0.8
74.6
36.4
Minor 5ss
38.5
-1.3
3.2
47.5
48
Minor BPS
51.9
0.06
2
68.15
38.4

Associated Gene:

Gene:
LSM14A
Ensembl Gene ID:
ENSAPLG00000009420
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009867
11340519 - 11359516
18998