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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11364849_11365428_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11364849 - 11365428
Intron Length:
580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
AACTAATTATTT
Flanking Amino Acid:
LLSAADDRNQDNKTKTWPPK
Intron Amino Acid Position:
944

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
100
1.12
0.4
100
0
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
45.8
-0.2
1.9
61.86
41.9

Associated Gene:

Gene:
KIAA0355
Ensembl Gene ID:
ENSAPLG00000009718
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010138
11364525 - 11387752
23228