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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11370705_11371261_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11370705 - 11371261
Intron Length:
557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATCTC
5'SS Class:
major
3'SS Sequence:
TTTGTTGATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATTTTTTTAAGT
Flanking Amino Acid:
VFDIHRWKEGREQALPCIQI
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
69.7
41.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
78.4
0.64
1
73.7
40.9
Minor 5ss
37.1
-1.5
3.3
52.9
44.2
Minor BPS
71.1
0.74
1.5
85.39
35.1

Associated Gene:

Gene:
KIAA0355
Ensembl Gene ID:
ENSAPLG00000009718
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010138
11364525 - 11387752
23228