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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11376789_11377751_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11376789 - 11377751
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATAGCC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACAAAAT
U12 Branch Point Sequence:
TGTCACAAAATT
Flanking Amino Acid:
SAAENLKLKTHTMLQLIKEA
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
60.1
37.4
Major BPS
49.7
-0
1.1
55.6
36
Major PPT
100
1.12
0.4
100
0
Minor 5ss
32.2
-2
3.3
44.1
43.3
Minor BPS
46.1
-0.2
2
68.51
41.9

Associated Gene:

Gene:
KIAA0355
Ensembl Gene ID:
ENSAPLG00000009718
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010138
11364525 - 11387752
23228