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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11378145_11378417_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11378145 - 11378417
Intron Length:
273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTTCTTTAATT
Flanking Amino Acid:
LNMKIDSALQAYKVALESLG
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
83.9
30.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
84.8
0.78
0.8
82.3
33
Minor 5ss
44.3
-0.6
3.1
64.1
47.4
Minor BPS
90.6
1.35
0.7
99.65
21.1

Associated Gene:

Gene:
KIAA0355
Ensembl Gene ID:
ENSAPLG00000009718
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010138
11364525 - 11387752
23228