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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11380895_11387257_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11380895 - 11387257
Intron Length:
6363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTACTTGAAAT
Flanking Amino Acid:
QKEFSLQDIEVLGRCFLTVM
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.5
21.2
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
86.4
0.82
0.7
80.7
24.7
Minor 5ss
40.5
-1.1
2.8
52
45.2
Minor BPS
64.8
0.54
1.6
83.28
37.1

Associated Gene:

Gene:
KIAA0355
Ensembl Gene ID:
ENSAPLG00000009718
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010138
11364525 - 11387752
23228