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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11435141_11439453_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11435141 - 11439453
Intron Length:
4313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTGGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
GTTTAATTAAGC
Flanking Amino Acid:
EGDKERFQKFSLTLNTDHGD
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
82.6
0.73
1
80.6
37
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
52.5
0.06
2.1
69.69
41.1

Associated Gene:

Gene:
GPI
Ensembl Gene ID:
ENSAPLG00000010107
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010618
11435022 - 11454700
19679